In-crisis delivery rate: a novel measure of success in communal water management

Of the plethora of studies that discuss requirements for successful irrigation management, few pay close attention to what actually happens when the supply of water becomes extremely low. Such an oversight in the literature is unfortunate, because this is precisely when management matters. To understand what separates success from failure in irrigation management at times of critical water shortages, the authors conducted emergency fieldwork in February 2010 along four major irrigation channels in a drought-stricken rice-growing area within the Chinese province of Yunnan. Separately, satellite images of the four villages dated February 2009 and February 2010 were jointly analysed to produce a novel indicator for a village’s success in water management. Called the in-crisis delivery rate, this indicator compares water delivery between normal and drought years and directly evaluates performance in water management during crisis periods. The results led to an unexpected discovery that, contrary to common expectations, the only village of the present study that deployed a traditional earthen water channel secured substantially more water throughout the drought period than those with concrete-lined channels. It is hypothesised that the labour intensive, rather than capital intensive, nature of repair work of the earthen channel enabled flexible operations, and hence had the comparative advantage under a skilled management team. This result confirms the importance of daily maintenance work, which tends to occur less often after modernisation of water paths.     

Association between energy status early postpartum and subsequent embryonic mortality in high‐yielding recipient cows

High‐yielding Holstein‐Friesian recipients (n = 43) were used in order to investigate the relation between energy balance status during the early postpartum period and subsequent embryonic mortality after transferring good‐quality frozen embryos. Blood samples were collected during the second, third, fourth, fifth, sixth and seventh weeks postpartum in order to measure energy status indicators. These indicators include β hydroxyl butyric acid (BHBA), non‐esterified fatty acid (NEFA), total cholesterol (T‐chol), glucose and blood urea nitrogen (BUN). Moreover, body condition scores (BCS) were assessed during the same period. Pregnancy diagnosis by ultrasonography at the 28th day postestrus and embryo viability was ascertained until 45 days postestrus in order to detect late embryonic mortality (LEM). The pregnancy rate on day 28 was 44.2% (19/43); however, five cows (11.6%) experienced LEM by day 45. Based on the non‐return rate at day 24, non‐pregnant animals, as diagnosed by ultrasonography, were allocated into animals with longer estrus intervals than 24 days (32.5%; mid‐embryonic mortality (MEM) group) and animals returning to estrus by day 24 postestrus (23.5%; early embryonic mortality (EEM) group). At week 5 postpartum, BCS was significantly (P < 0.05) lower in the LEM group than that of pregnant (PREG), EEM and MEM groups. NEFA was significantly higher in animals that experienced LEM (LEM group) at week 7 postpartum (289.6 ± 47.0 µEq/L; P < 0.01) than that of PREG (196.8 ± 16.0 µEq/L), EEM (157.2 ± 18.6 µEq/L) and MEM groups (191.5 ± 14.4 µEq/L). In conclusion, lower BCS at week 5 postpartum and higher NEFAs at week 7 postpartum may be associated with subsequent LEM in high‐yielding recipient cows.     

Genome‐wide association study for carcass traits,fatty acid composition,chemical composition,sugar, and the effects of related candidate genes in Japanese Black cattle

We performed a genome‐wide association study (GWAS) and candidate gene analysis to: (i) evaluate the effectiveness of the GWAS in our small population by performing GWAS for carcass weight (CW) and fatty acid composition; (ii) detect novel candidate regions affecting non‐CW carcass traits, chemical composition and sugar; and (iii) evaluate the association of the candidate genes previously detected in CW and fatty acid composition with other economically important traits. A total of 574 Japanese Black cattle and 40 657 Single nucleotide polymorphisms were used. In addition, candidate gene analyses were performed to evaluate the association of three CW‐related genes and two fatty acid‐related genes with carcass traits, fatty acid composition, chemical composition and sugar. The significant regions with the candidate genes were detected for CW and fatty acid composition, and these results showed that a significant region would be detectable despite the small sample size. The novel candidate regions were detected on BTA23 for crude protein and on BTA19 for fructose. CW‐related genes associated with the rib‐eye area and fatty acid composition were identified, and fatty acid‐related genes had no relationship with other traits. Moreover, the favorable allele of CW‐related genes had an unfavorable effect on fatty acid composition.     

Rice yield losses by competition with weeds in rainfed paddy fields in north-east Thailand

Economic growth in recent years has induced a labor shortage for agriculture in north-east Thailand. Labor-saving techniques, such as the replacement of transplanting with direct seeding, have become widespread. Direct seeding methods have advantages over transplanting regarding labor savings and reductions in production risks, but may cause weed problems. Therefore, rice yield reduction by competition with weeds becomes a potential problem in this region. In the present research, the extent of weed competition in rice production from the viewpoint of resource level and disturbance intensity was studied. A large number of paddy fields from a wide range of climatic, topographical, soil and hydrological conditions were analyzed. The survey was conducted every 3 weeks, and data on paddy cultivation, weeds and water conditions were recorded. Average yield of direct seeded rice was significantly lower than that of transplanted rice. The yield decreased with resource decreases in both direct seeded (DSF) and transplanted paddy fields (TF). Although the yield was not different under resource-rich conditions, the yield of direct seeded rice was lower than that of transplanted rice under resource-medium and -poor conditions. Competition intensity was not different among resource levels or between DSF and TF. Competition intensity in all fields was between 0.02 and 0.09 on average, indicating 2–9% yield losses caused by competition with weeds regardless of resource level and disturbance intensity. This suggests that low yield of direct seeded rice under resource-medium and -poor conditions was not mainly caused by competition with weeds, whereas yield losses by weeds were observed in all field types. However, from an economical viewpoint, weeding should be applied only to limited parts of this region with stable and relatively high rice yields.     

Incidence of viruses in <Emphasis Type="Italic">Alstroemeria</Emphasis> plants cultivated in Japan and characterization of <Emphasis Type="Italic">Broad bean wilt virus-2, Cucumber mosaic virus</Emphasis> and <Emphasis Type="Italic">Youcai mosaic virus</Emphasis>

Alstroemeria plants were surveyed for viruses in Japan from 2002 to 2004. Seventy-two Alstroemeria plants were collected from Aichi, Nagano, and Hokkaido prefectures and 54.2% were infected with some species of virus. The predominant virus was Alstroemeria mosaic virus, followed by Tomato spotted wilt virus, Youcai mosaic virus (YoMV), Cucumber mosaic virus (CMV), Alstroemeria virus X and Broad bean wilt virus-2 (BBWV-2). On the basis of nucleotide sequence of the coat protein genes, all four CMV isolates belong to subgroup IA. CMV isolates induced mosaic and/or necrosis on Alstroemeria. YoMV and BBWV-2 were newly identified by traits such as host range, particle morphology, and nucleotide sequence as viruses infecting Alstroemeria. A BBWV-2 isolate also induced mosaic symptoms on Alstroemeria seedlings.     

Differences in weed vegetation in response to cultivating methods and water conditions in rainfed paddy fields in north-east Thailand

Rainfed paddy cultivation predominates in north-east Thailand. Direct dry seeding is replacing transplanting rice cultivation to increase the frequency of successful plantings and to save labor. The present study clarified differences in weed vegetation of direct dry-seeded and transplanted paddy fields under rich, medium and poor water conditions from agricultural and ecological viewpoints. A large number of paddy fields from a wide range of climatic, topographic, soil and hydrological conditions were used. A survey was conducted every three weeks, and data regarding paddy cultivation, weeds and water conditions were collected. Expansion of direct dry seeding may increase species with in-between water adaptability to hygrophytes and mesophytes, and decrease hydrophytes and mesophytes. This characteristic was remarkable under poor water conditions. Rice cover was similar in either planting method under rich water conditions. However, cover of direct-seeded rice was significantly smaller than that of transplanted rice under medium and poor water conditions. Species diversity was higher in direct dry-seeded paddy fields than in transplanted paddy fields under medium and poor water conditions. Impact of direct dry seeding in the fields with rich water conditions on the vegetation is small in the context of maintaining rice production by transplanting and species diversity. However, direct dry seeding is mainly adopted in fields with poor water conditions. Impact of the changes in cultivating methods is large on rice productivity, species composition and species diversity under such conditions. Therefore, how to best use resource-poor fields may be the key to maintaining rice production and regional-level species diversity.     

来自中间偃麦草基因组的类反转录转座子片段的克隆及其特征分析

中间偃麦草(Thinopyrum intermedium, (Host) Barkworth and Dewey)是普通小麦 (Triticum aestivum L.) 遗传改良的重要基因源,已有许多重要基因导入普通小麦。本研究从中间偃麦草基因组克隆到一个类反转录转座子片段,命名为pTi28。该序列高丰度存在于中间偃麦草基因组,低丰度（寡拷贝）存在于普通小麦及其近缘种属硬粒小     

Antiproliferative and Antimicrobial Potentials of a Lectin from Aplysia kurodai (Sea Hare) Eggs

In recent years, there has been considerable interest in lectins from marine invertebrates. In this study, the biological activities of a lectin protein isolated from the eggs of Sea hare (Aplysia kurodai) were evaluated. The 40 kDa Aplysia kurodai egg lectin (or AKL-40) binds to D-galacturonic acid and D-galactose sugars similar to previously purified isotypes with various molecular weights (32/30 and 16 kDa). The N-terminal sequence of AKL-40 was similar to other sea hare egg lectins. The lectin was shown to be moderately toxic to brine shrimp nauplii, with an LC₅₀ value of 63.63 µg/mL. It agglutinated Ehrlich ascites carcinoma cells and reduced their growth, up to 58.3% in vivo when injected into Swiss albino mice at a rate of 2 mg/kg/day. The morphology of these cells apparently changed due to AKL-40, while the expression of apoptosis-related genes (p53, Bax, and Bcl-XL) suggested a possible apoptotic pathway of cell death. AKL-40 also inhibited the growth of human erythroleukemia cells, probably via activating the MAPK/ERK pathway, but did not affect human B-lymphoma cells (Raji) or rat basophilic leukemia cells (RBL-1). In vitro, lectin suppressed the growth of Ehrlich ascites carcinoma and U937 cells by 37.9% and 31.8%, respectively. Along with strong antifungal activity against Talaromyces verruculosus, AKL showed antibacterial activity against Staphylococcus aureus, Shigella sonnei, and Bacillus cereus whereas the growth of Escherichia coli was not affected by the lectin. This study explores the antiproliferative and antimicrobial potentials of AKL as well as its involvement in embryo defense of sea hare.     

Genome‐wide association study for fatty acid composition in Japanese Black cattle

Fatty acid composition is one of the important traits in beef. The aim of this study was to identify candidate genomic regions for fatty acid composition by genome‐wide association study with 50 K single nucleotide polymorphism (SNP) array in Japanese Black cattle. A total of 461 individuals and 40 657 SNPs were used in this study. We applied genome‐wide rapid association using mixed model and regression (GRAMMAR) and genomic control approaches to estimate the associations between genotypes and fatty acid composition. In addition, two SNPs in fatty acid synthase (FASN) (T1952A) and stearoyl‐CoA desaturase (SCD) (V293A) genes were also genotyped. Association analysis revealed that 30 significant SNPs for several fatty acids (C14:0, C14:1, C16:1 and C18:1) were located in the BTA19 FASN gene located within this region but the FASN mutation had no significant effect on any traits. We also detected one significant SNP for C18:1 on BTA23 and two SNPs for C16:0 on BTA25. The region around 17 Mb on BTA26 harbored two significant SNPs for C14:1 and SNP in SCD in this region showed the strongest association with C14:1. This study demonstrated novel candidate regions in BTA19, 23 and 25 for fatty acid composition.